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Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST006983
species:
Physcomitrella patens
miRNA family:
MIR536
source:
miRNEST
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCGTGCCAAGCTGTGTGCAA
miRNA*
GCCGCAGTTTGGCATGAAGC
mismatches:
2
bulges:
1
View larger
pre-miRNA
TCCTAAGTGTCTCCCCTTGGAA
GCCGCAGTTTGGCATGAAGC
ACTTATTCCTTTGCGCATCCATTTTGTGACTGCTTGTATTGAGTCGAATCCAATTCCT
TGCCTTCTACTTCCTTCCAATCTAGATCACTCCTGGTTTTTCACATTGTTTGGTTGTTGGGGGTCATATTGTTTGTATACCTTTTTTCGCACGAAATCTT
CAATTTGAAAGACGCTGTTGGAAACTCTAATTTCGAATTTCTGCAGCCACACCCAATAGTTTGAGGTCTTGTCGGTATCTTCCTTTGCGCGCCTACTTCA
GTGACTGCAGAAAGTCACTGCAGTCACTACCGGGGACGAACATACTAGCACTGTTAATCTCTCTATACTCGTCAATCTTCAGTTGTCCATGCACGATTTC
TCCCTAAAATTATTGAGGGGATATCAGAGT
TTCGTGCCAAGCTGTGTGCAA
CCAAGGGATTTCTCACTTC
dot-bracket secondary structure
....(((((....(((((((..
((((((((((((((((((((
.((((((((((((.((((.((..(((.((.(((..((((.(((..((...((((....
(((((((.((..((...((((..((((((....)))))).....))))...))..)).))))).)).))))..((((.........(((.((((...(((
(((.(((......(((((.(((((.((.......)).))))))))))......)))....))))))..)))))))..........))))(((((.....(
((((((((((.......)))))))))))....))).))((((.........))))..)).))).))))..).)).))..))).))...))))..(((((.
......)))))..))))))))))..)).))
)))))))))))))))).))..
)))))))......))))).
SIMILARITIES
miRBase
no hits
PMRD
ppt-miR536e
:
0
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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